PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C002617P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family Dof
Protein Properties Length: 355aa    MW: 39330.9 Da    PI: 7.5158
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C002617P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.76.2e-3970129261
          zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                     +++ l+cprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+ 
  MELO3C002617P1  70 QQEPLRCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRL 129
                     57889*****************************************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-2772128IPR003851Zinc finger, Dof-type
PfamPF027011.9E-3372128IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.4674128IPR003851Zinc finger, Dof-type
PROSITE patternPS01361076112IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MLGNCEKMVL ISSSPNQWPQ MMKNNNHPTS LDHDHQKGLN LIGSSSGIIM DNNNKQQDQK  60
TQQKQQQQHQ QEPLRCPRCD SSNTKFCYYN NYSLSQPRHF CKACKRYWTR GGTLRNVPVG  120
GGCRKNKRLK RPTIASTTTT VTHSSSSPAP TAPDSTSSSS TSCNTNPLHN IFYGSTSDLN  180
LPFSGYDHHH HNHLQTHLNA LGLGFSSPNI DHRDFNLNGF NSSSLLSGYS SLFGSNNNNP  240
SSNSTSISSL LASKFDPNLF GNLASSQPFD DHVMGSNGGD QLGLNVKDVK LEDGMKRLNW  300
EDDDHQQQNH QTDNEIVAQS NDDHHNSLFA NNWTSQNWHH DPPNLASSIT SSLI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819320.0LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008442739.10.0PREDICTED: dof zinc finger protein DOF1.4-like
TrEMBLA0A0A0LV580.0A0A0A0LV58_CUCSA; Uncharacterized protein
STRINGVIT_10s0003g00040.t012e-59(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45223356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28310.14e-34Dof family protein